Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395021
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This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj034 |
| Access Control Date | 2024-10-18 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.1.0.18335; Real Time Analysis (RTA) v4.6.2; Illumina DRAGEN BCL Convert 07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1493/20231019_PP_AGRF_22FFLYLT3/ |
| bioplatforms_dataset_id | 102.100.100/399029 |
| bioplatforms_library_id | 102.100.100/397275 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP034_Ptf_mac |
| bioplatforms_sample_id | 102.100.100/395021 |
| ccg_jira_ticket | BPAOPS-1493 |
| class | Dothideomycetes |
| collector | Hasset, K. |
| common_name | Spot form net blotch (SFNB) |
| country | Australia |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 23/10/2023 |
| date_of_transfer | 2023-10-19 |
| date_of_transfer_to_archive | 2023-10-19 |
| description | Illumina short read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1493 |
| facility | AGRF |
| facility_project_code | CAGRF230514648 |
| facility_sample_id | 14607-40 |
| family | Pleosporaceae |
| flowcell_id | 22FFLYLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20231019_PP_AGRF_22FFLYLT3 |
| genus | Pyrenophora |
| host_common_name | Barley |
| host_family | Poaceae |
| host_organ | Leaf |
| host_scientific_name | Hordeum vulgare |
| host_status | Cultivated grain crop |
| host_symptom | Spot form net blotch (SFNB) |
| insert_size_range | 350 bp |
| isolate | 19PTM147 |
| library_construction_protocol | Illumina DNA Prep (M) |
| library_id | 397275 |
| library_index_id_dual | UDP0039-F & UDP0039-R |
| library_index_seq_dual | CAATCGGCTG-GCTGTAGGAA |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 6.18 |
| library_pcr_cycles | 5 |
| library_prep_date | 2023-09-01 |
| library_prepared_by | EB |
| library_selection | Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| material_conc_ng_ul | 19.0 |
| material_extracted_by | Elzette Palmiero | Centre for Crop and Disease Management, Curtin University |
| material_extraction_date | 2023-05-01 |
| material_extraction_method | CTAB |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| order | Pleosporales |
| phylum | Ascomycota |
| project_lead | James Hane | CCDM |
| sample_collection_type | University |
| sample_custodian | Simon Ellwood | Centre for Crop and Disease Management (CCDM) |
| sample_type | DNA |
| scientific_name | Pyrenophora teres f. maculata |
| scientific_name_authorship | Smed.-Pet., The Royal Veterinary and Agricultural University Yearbook: 139 (1971) |
| scientific_name_note | Syn: Pyrenophora teres Drechsler, J. Agric. Res., Washington 24(8): 656 (1923); Drechslera teres (Sacc.) Shoemaker, Can. J. Bot. 37(5): 881 (1959); Drechslera teres f. maculata Smed.-Pet., Arb. Tiflis Bot. Gard.: 139 (1971); Helminthosporium hordei Eidam, Der Landw. (Schles. Landw. Ztg), Breslau 27: 509 (1891); Helminthosporium teres Sacc., Syll. fung. (Abellini) 4: 412 (1886) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | 1.0 |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | teres |
| specimen_custodian | Centre for Crop and Disease Management (CCDM) |
| specimen_id | CCDM-19PTM147 |
| specimen_id_description | Centre for Crop and Disease Management (CCDM) |
| state_or_region | Watercarrin, WA |
| sub_species | maculata |
| taxon_id | 97480 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1493 |
| work_order | WO20018 |