Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395102
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:400:pp-prj017 |
| Access Control Date | 2024-12-17 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.1.0.18335; Real Time Analysis (RTA) v4.6.2; Illumina DRAGEN BCL Convert 07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1515/20231113_PP_AGRF_CAGRF230514763_22G3MLLT3/ |
| bioplatforms_dataset_id | 102.100.100/399030 |
| bioplatforms_library_id | 102.100.100/397356 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP017_A_fabae |
| bioplatforms_sample_id | 102.100.100/395102 |
| ccg_jira_ticket | BPAOPS-1515 |
| class | Dothideomycete |
| collector | South Australian Research and Development Institute (SARDI) |
| common_name | Ascochyta blight |
| country | Australia |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 24/11/2023 |
| date_of_transfer | 2023-11-13 |
| date_of_transfer_to_archive | 2023-11-13 |
| description | Illumina short read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1515 |
| facility | AGRF |
| facility_project_code | CAGRF230514763 |
| facility_sample_id | 14399-68 |
| family | Didymellaceae |
| flowcell_id | 22G3MLLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20231113_PP_AGRF_CAGRF230514763_22G3MLLT3 (Partial - 69 samples) |
| genus | Ascochyta |
| host_common_name | Faba bean |
| host_family | Fabaceae |
| host_organ | Foliage |
| host_scientific_name | Vicia faba |
| host_status | Cultivated |
| host_symptom | Blight |
| insert_size_range | 450 ± 75 bp |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 397356 |
| library_index_id_dual | UDP0065-F & UDP0065-R |
| library_index_seq_dual | TAATGTGTCT-GTAAGGCATA |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.62 |
| library_prep_date | 2023-08-05 |
| library_prepared_by | SW |
| library_selection | PCR-Free Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_info_restricted | No |
| location_text | Wolseley |
| material_extracted_by | South Australian Research and Development Institute (SARDI) |
| material_extraction_date | 2023-05-13 |
| material_extraction_method | Extracted using SARDI's Molecular Diagnostic Centre's proprietary DNA extraction method |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| order | Pleosporales |
| phylum | Ascomycota |
| project_lead | Sara Blake | South Australian Research and Development Institute (SARDI) |
| sample_collection_type | Culture collection |
| sample_custodian | Grains Research and Development Corporation (GRDC), University of Adelaide, South Australian Research and Development Institute (SARDI). |
| sample_type | Single spored isolate |
| scientific_name | Ascochyta fabae |
| scientific_name_authorship | Jellis & Punithalingam (1991) |
| sequencing_facility | AGRF |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | fabae |
| specimen_custodian | Grains Research and Development Corporation (GRDC), University of Adelaide, South Australian Research and Development Institute (SARDI) |
| specimen_id | FT19129-1 |
| specimen_id_description | South Australian Research and Development Institute (SARDI) Pulse Pathology Culture Collection |
| state_or_region | South Australia |
| taxon_id | 372025 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1515 |
| work_order | WO20019 |