Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395167
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This dataset is currently under a short embargo period until February 19, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:400:pp-prj019 |
| Access Control Date | 2025-02-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.2.0.28691; Real Time Analysis (RTA) v4.6.7; Illumina DRAGEN BCL Convert v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1551/20240116_PP_AGRF_CAGRF230514764_22H33VLT3/ |
| bioplatforms_dataset_id | 102.100.100/399053 |
| bioplatforms_library_id | 102.100.100/398097 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP019_A_lentis |
| bioplatforms_sample_id | 102.100.100/395167 |
| ccg_jira_ticket | BPAOPS-1551 |
| class | Dothideomycete |
| collector | South Australian Research and Development Institute (SARDI) |
| common_name | Ascochyta blight |
| country | Australia |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 16/01/2024 |
| date_of_transfer | 2024-01-16 |
| date_of_transfer_to_archive | 2024-01-16 |
| description | Illumina Short read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1551 |
| facility | AGRF |
| facility_project_code | CAGRF230514764 |
| facility_sample_id | 14357-63 |
| family | Didymellaceae |
| flowcell_id | 22H33VLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240116_PP_AGRF_CAGRF230514764_22H33VLT3 |
| genus | Ascochyta |
| host_common_name | Lentil |
| host_family | Fabaceae |
| host_organ | Foliage |
| host_scientific_name | Len culinaris |
| host_status | Cultivated |
| host_symptom | Blight |
| insert_size_range | 450 ± 75 bp |
| library_comments | Additional Sequencing of previously seqeunced libraries |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 398097 |
| library_index_id_dual | UDP0259-F & UDP0259-R |
| library_index_seq_dual | TCATACCGTT-GGTAACGCAG |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 0.188 |
| library_prep_date | 2023-08-18 |
| library_prepared_by | SW |
| library_selection | PCR-Free Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_info_restricted | No |
| location_text | Maitland |
| material_extracted_by | Centre for Crop and Disease Management (CCDM) Curtin University |
| material_extraction_date | 2023-05-23 |
| material_extraction_method | Modified CTAB DNA extraction method by Xin and Cheng, 2012 |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| order | Pleosporales |
| phylum | Ascomycota |
| project_lead | Sara Blake | SARDI |
| sample_collection_type | Culture collection |
| sample_custodian | Grains Research and Development Corporation (GRDC), Centre for Crop and Disease Management (CCDM) Curtin University, South Australian Research and Development Institute (SARDI) |
| sample_type | Single spored isolate |
| scientific_name | Ascochyta lentis |
| scientific_name_authorship | Kaiser et al (1997) |
| sequencing_facility | AGRF |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | lentis |
| specimen_custodian | Grains Research and Development Corporation (GRDC), Centre for Crop and Disease Management (CCDM) Curtin University, South Australian Research and Development Institute (SARDI) |
| specimen_id | FT20019-1 |
| specimen_id_description | South Australian Research and Development Institute (SARDI) Pulse Pathology Culture Collection |
| state_or_region | South Australia |
| taxon_id | 205686 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1551 |
| work_order | WO20020 |