Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395433
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj029 |
| Access Control Date | 2024-09-10 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.1.0.18335; Real Time Analysis (RTA) v4.6.2; Illumina DRAGEN BCL Convert 07.021.645.4.0.3 |
| ancillary_notes | 7 g |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1471/20230911_PP_AGRF_CAGRF230615345_22CFFJLT3/ |
| bioplatforms_dataset_id | 102.100.100/399037 |
| bioplatforms_library_id | 102.100.100/397687 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP029_P_avenaria |
| bioplatforms_sample_id | 102.100.100/395433 |
| ccg_jira_ticket | BPAOPS-1471 |
| class | Dothideomycetes |
| collection_date | 2021-11-02 |
| collector | Garrard, T. |
| common_name | Oat septoria blotch |
| country | Australia |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 12/09/2023 |
| date_of_transfer | 2023-09-11 |
| date_of_transfer_to_archive | 2023-09-11 |
| decimal_latitude_public | -34.24389 |
| decimal_longitude_public | 116.146653 |
| description | Illumina short read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1471 |
| facility | AGRF |
| facility_project_code | CAGRF230615345 |
| facility_sample_id | 14512-47 |
| family | Phaeosphaeriaceae |
| flowcell_id | 22CFFJLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20230911_PP_AGRF_CAGRF230615345_22CFFJLT3 |
| genus | Phaeosphaeria |
| host_common_name | Oat |
| host_family | Poaceae |
| host_organ | Leaf |
| host_scientific_name | Avena sativa |
| host_status | Cereal grain |
| host_symptom | Leaf blotch |
| insert_size_range | 450 bp ± 75 bp |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 397687 |
| library_index_id | UDP0047-F & UDP0047-R |
| library_index_sequence | GTCCTGGATA-CGGTGGCGAA |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.15 |
| library_prep_date | 2023-08-22 |
| library_prepared_by | Eleise Britt |
| library_selection | PCR-Free Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_text | Manjimup |
| material_conc_ng_ul | 14.6 |
| material_extracted_by | South Australian Research and Development Institute (SARDI) |
| material_extraction_date | 2023-04-17 |
| material_extraction_method | Extracted using SARDI's Molecular Diagnostic Centre's proprietary DNA extraction method |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| order | Pleosporales |
| phylum | Ascomycota |
| project_lead | Tara Garrard | SARDI |
| sample_custodian | Tara Garrard | SARDI |
| scientific_name | Phaeosphaeria avenaria f.sp. avenaria |
| scientific_name_authorship | O.E. Erikss., (1967) |
| scientific_name_note | NCBI:txid215456 is P. avenae f. sp. avenae |
| sequencing_facility | AGRF |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | avenaria |
| specimen_custodian | South Australian Research and Development Institute (SARDI) |
| specimen_id | 190/21 |
| specimen_id_description | South Australian Research and Development Institute (SARDI) |
| state_or_region | WA |
| sub_species | f.sp. avenaria |
| taxon_id | 215456 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1471 |
| work_order | WO20028 |