Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395503
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This dataset is currently under a short embargo period until April 4, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:560:pp-prj023 |
| Access Control Date | 2025-04-04 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.1.0.18335; Real Time Analysis (RTA) v4.6.2; Illumina DRAGEN BCL Convert 07.021.645.4.0.3 |
| ancillary_notes | Tube 51 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1485/20230922_PP_AGRF_CAGRF230715551_22CF5LLT3/ |
| bioplatforms_dataset_id | 102.100.100/399038 |
| bioplatforms_library_id | 102.100.100/397757 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP023_C_lupini |
| bioplatforms_sample_id | 102.100.100/395503 |
| ccg_jira_ticket | BPAOPS-1485 |
| class | Sordariomycetes |
| collector | Geoff Thomas |
| common_name | Lupin anthracnose |
| country | Australia |
| data_context | Genomics |
| data_type | Short read |
| date_data_published | 25/09/2023 |
| date_of_transfer | 2023-09-22 |
| date_of_transfer_to_archive | 2023-09-25 |
| decimal_latitude_public | -30.51 |
| decimal_longitude_public | 115.58 |
| description | Illumina short read |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket:BPAOPS-1485 |
| facility | AGRF |
| facility_project_code | CAGRF230715550 |
| facility_sample_id | 14715-4 |
| family | Glomerellaceae |
| flowcell_id | 22CF5LLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20230922_PP_AGRF_CAGRF230715551_22CF5LLT3 |
| genus | Colletotrichum |
| host_common_name | Lupin |
| host_family | Fabaceae |
| host_organ | Stem |
| host_scientific_name | Lupinus cosentinii |
| host_status | Pulse crop |
| host_symptom | necrotic lesions on leaves, stems and pods |
| insert_size_range | 450 ± 75 bp |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 397757 |
| library_index_id_dual | UDP0128-F & UDP0128-R |
| library_index_seq_dual | CTAATAACCG-AACCGCATCG |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.38 |
| library_prep_date | 2023-08-19 |
| library_prepared_by | E. Britt |
| library_selection | PCR-Free Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_text | Badgingarra |
| material_conc_ng_ul | 23.6 |
| material_extracted_by | Yong Han and Hieu Tran / DPIRD |
| material_extraction_date | 2023-05-22 |
| material_extraction_method | DNeasy Plant Mini Kit Qiagen |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| order | Incertae sedis |
| phylum | Ascomycota |
| project_lead | Manisha Shankar | DPIRD |
| sample_collection_type | Herbarium |
| sample_custodian | Geoff Thomas | DPIRD |
| scientific_name | Colletotrichum gloeosporioides |
| scientific_name_authorship | (Penz.) Penz. & Sacc. |
| sequencing_facility | AGRF |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | gloeosporioides |
| specimen_custodian | Plant Pathology Culture Collection, Western Australia (WAC) |
| specimen_id | WAC15257 |
| specimen_id_description | Plant Pathology Culture Collection, Western Australia (WAC) |
| state_or_region | WA |
| taxon_id | 474922 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1485 |
| work_order | WO20030 |