PPA, Proteomics, Proteome database generation, Dataset ID: 453291, Analysed data
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ppa-consortium-members |
| Access Control Date | 2025-09-20 |
| Access Control Mode | date |
| Sequence Data Type | proteomics-database |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ppa_staging/proteomics-database/BPAOPS-1689/20240920_PPA_CSIRO_453291/ |
| bioplatforms_dataset_id | 102.100.100/453291 |
| bioplatforms_library_id | 102.100.100/451784 |
| bioplatforms_project | Plant Protein Atlas (PPA) |
| bioplatforms_sample_id | 102.100.100/448884 |
| common_name | Faba bean, fava bean |
| contact_person | Arineh Tahmasian |
| data_context | Proteome database generation |
| data_type | Main Dataset |
| database_generation_date | 2023-01-19 |
| date_of_transfer | 2024-09-20 |
| date_of_transfer_to_archive | 2024-09-20 |
| decription_of_how_the_database_is_generated | Subjecting sequences to functional analysis using OmicsBox (1- BALST against NCBI, 2- BLAST2GO mapping and 3- BLAST2GO annotation). Also, Pfam domain search for the database entries using CLC genomics. Appended iRT and cRAP proteins to the database. Removal of duplicated (as well as truncated) proteins from the final database. |
| description | Protein database - FASTA file |
| experiment_type | Field Trial |
| facility | UniSA |
| facility_project_code | - |
| facility_sample_id | - |
| file_description | FASTA file containing annotated proteins and their sequences |
| genotype | Tiffany - https://doi.org/10.1038/s41586-023-05791-5 |
| initiative_code | PPA |
| omics | Proteomics |
| proteome_size | 35736 |
| proteomics_facility | CSIRO |
| raw_or_analysed_data | Analysed data |
| scientific_name | Vicia Faba |
| scientific_name_authorship | - |
| scientific_name_note | - |
| taxonomic_group | Plant |
| ticket | BPAOPS-1689 |