Hastings River Mouse, Population Genomics, Illumina FASTQ, Tail
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-01-29 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1021/AGRF_TSI_HVMTKDRXX_358727_358729/ |
| bpa_dataset_id | 102.100.100/358729 |
| certainty | unknown |
| class | Mammalia |
| collection_date | 2011-05-13 |
| collector | D. Phillips |
| collector_sample_id | HRM2 |
| common_name | Hastings River Mouse |
| country | Australia |
| data_context | Population Genomics |
| data_custodian | Kevin C. Rowe |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358729 |
| date_of_transfer | 2021-01-29 |
| date_of_transfer_to_archive | 2021-01-29 |
| description | NovaSeq 6000 ddRAD Pseudomys oralis ddRAD (data set ID 358729) and Galaxias fontanus ddRAD (data set ID 358727) |
| experimental_design | PstI and MseI |
| family | Muridae |
| flowcell_id | HVMTKDRXX |
| flowcell_type | SP 200 |
| folder_name | AGRF_TSI_HTW2NDRXX_358724 |
| genus | Pseudomys |
| institution_name | Museums Victoria |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Single |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2020-12-14 |
| library_prepared_by | Jade Cooke |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_status | Data available |
| library_strategy | RAD-Seq |
| library_type | ddRAD_AGRF |
| lifestage | unknown |
| location_text | Spicers Peak Nature Refuge, 0.7 km SE of end of Wilkinsons Road |
| material_conc_ng_ul | 22.3 |
| material_extracted_by | Dr. Amy L. Adams |
| material_extraction_date | 2020-11-10 |
| material_extraction_method | Qiagen Dneasy Blood & Tissue Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-08-28 |
| metadata_revision_filename | 20240829_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | unknown |
| n_libraries_pooled | 3.0 |
| order | Rodentia |
| phenotypic_sex | unknown |
| phylum | Chordata |
| sample_custodian | Kevin C. Rowe |
| sample_type | Tissue sample |
| scientific_name | Pseudomys oralis |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | illumina |
| species | oralis |
| specimen_id | Z55147 |
| specimen_id_description | Museums Victoria registration number |
| state_or_region | Queensland |
| taxon_id | 442616.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1021 |
| tissue_collection | HRM |
| tissue_collection_type | Museum |
| tissue_number | Z55147_tail |
| tissue_preservation | unknown |
| tissue_type | Tail |
| wild_captive | wild-caught |
| work_order | 14005 |