Regent honeyeater, Illumina FASTQ, Blood
Dataset size is: 0.00 Bit
Data and Resources
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358745_HW7NTDRXY_AGTCAA_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GCCAAT_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_TGACCA_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTGAAA_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_TGACCA_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CAGATC_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ATGTCA_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CGATGT_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTCCGC_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_AGTCAA_L001_R1.fastq.gz Metadata Only FASTQ
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TSI_NGS_HW7NTDRXY_library_metada... Metadata Only XLSX
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358745_HW7NTDRXY_CTTGTA_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_AGTTCC_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GCCAAT_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ATGTCA_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CGATGT_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTCCGC_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CAGATC_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_TGACCA_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_AGTCAA_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CAGATC_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_AGTTCC_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ATGTCA_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_AGTTCC_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTCCGC_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_AGTCAA_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CGATGT_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CTTGTA_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ACAGTG_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CGATGT_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ATGTCA_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_CAGATC_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ACAGTG_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTCCGC_L002_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTGAAA_L001_R2.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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358745_HW7NTDRXY_AGTTCC_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-02-22 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1197/AGRF_TSI_HW7NTDRXY_358745/ |
| bioplatforms_project | Threatened Species Initiative |
| bpa_dataset_id | 102.100.100/358745 |
| class | Aves |
| collection_date | 2021-12-02 |
| collector | Birdlife Australia |
| common_name | Regent honeyeater |
| country | Australia |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358745 |
| date_of_transfer | 2022-02-22 |
| date_of_transfer_to_archive | 2022-02-22 |
| decimal_latitude_public | -32.84 |
| decimal_longitude_public | 151.45 |
| description | Regent Honeyeater ddRAD (dataset ID 358745) |
| experimental_design | PstI and MseI |
| facility_project_code | QAGRF21108543 |
| family | Meliphagidae |
| flowcell_id | HW7NTDRXY |
| flowcell_type | S1 300 |
| folder_name | AGRF_TSI_HW7NTDRXY_358745 |
| genus | Anthochaera |
| insert_size_range | 280-342 |
| institution_name | Taronga Conservation Society Australia |
| latitude | -32.84 |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_oligo_sequence | AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC*G |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2022-02-14 |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | adult |
| longitude | 151.45 |
| material_extracted_by | Jo Day |
| material_extraction_date | 2021-12-10 |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-08-28 |
| metadata_revision_filename | 20240829_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 11.0 |
| order | Passeriformes |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Taronga Conservation Society Australia |
| scientific_name | Anthochaera phyrgia |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | phyrgia |
| specimen_id | 053-18150 |
| specimen_id_description | ABBBS Band number |
| state_or_region | New South Wales |
| taxon_id | 2020318.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1197 |
| tissue_number | 053-18150_Blood |
| tissue_preservation | Filter & frozen |
| tissue_type | Blood |
| wild_captive | wild |
| work_order | 14011 |