Eastern Barred Bandicoot, Population genetics, Illumina FASTQ, Skin
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-11-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | No restrictions |
| associated_media | None |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1166/AGRF_TSI_HN77YDRXY_358752/ |
| bpa_dataset_id | 102.100.100/358752 |
| certainty | NA |
| class | Mammalia |
| collection_method | Biopsy |
| collector | unknown |
| collector_sample_id | NA |
| common_name | Eastern Barred Bandicoot |
| country | Australia |
| data_context | Population genetics |
| data_custodian | John Black |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358752 |
| date_of_transfer | 2021-11-11 |
| date_of_transfer_to_archive | 2021-11-12 |
| decimal_latitude_public | -37.88 |
| decimal_longitude_public | 144.44 |
| description | Novaseq 6000 ddRAD Perameles gunnii ddRAD data set ID 358752 |
| experimental_design | PstI and MspI |
| facility_project_code | CAGRF21087837 |
| family | Peramelidae |
| flowcell_id | HN77YDRXY |
| flowcell_type | SP 200 |
| folder_name | AGRF_OMG_ HN77DRXY_358752 |
| genotypic_sex | unknown |
| genus | Perameles |
| habitat | unknown |
| health_state | unknown |
| insert_size_range | 280-342 |
| institution_name | Cesar Australia |
| latitude | -37.88 |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | single |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2021-10-28 |
| library_prepared_by | Amy Longva |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD_AGRF |
| lifestage | unknown |
| longitude | 144.44 |
| material_conc_ng_ul | unknown |
| material_extracted_by | John Black |
| material_extraction_date | 2021-06-17 |
| material_extraction_method | Qiagen DNEasy |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-08-28 |
| metadata_revision_filename | 20240829_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| n_libraries_pooled | 10.0 |
| order | Peramelamorphia |
| phenotypic_sex | unknown |
| phylum | Chordata |
| sample_custodian | Andrew Weeks |
| sample_quality | NA |
| sample_type | Tissue Sample |
| scientific_name | Perameles gunnii |
| scientific_name_authorship | Gray 1838 |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Mt Rothwell |
| species | gunnii |
| specimen_id | MTR108, MTR108b |
| specimen_id_description | Cesar Australia internal Identifier |
| state_or_region | Victoriatoria |
| subspecies | NA |
| taxon_id | 37737.0 |
| taxonomic_group | Marsupial |
| ticket | BPAOPS-1166 |
| tissue_collection | EBB Tissue |
| tissue_collection_type | Private |
| tissue_number | MTR108, MTR108b |
| tissue_preservation | Frozen, in ethanol |
| tissue_preservation_temperature | -20C |
| tissue_type | Skin |
| wild_captive | wild |
| work_order | 14015 |