Orange-bellied parrot, Transcriptome, Illumina FASTQ, Kidney
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-04-14 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Open Access |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | Medical euthanasia for welfare purposes |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1062/20210414_TSI_UNSW_H2KN2DRXY/ |
| birth_date | 2014-12-27 |
| ccg_jira_ticket | BPAOPS-1062 |
| certainty | Certain |
| class | Aves |
| collection_date | 2020-08-20 |
| collection_method | Medical euthanasia for welfare purposes |
| collector | Carolyn Hogg, USYD |
| collector_sample_id | 1.0 |
| common_name | Orange-bellied parrot |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Carolyn Hogg |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358737 |
| date_of_transfer | 2021-04-14 |
| date_of_transfer_to_archive | 2021-04-15 |
| death_date | 2020-08-20 |
| facility_project_code | Q0005470 |
| facility_sample_id | FAR9073A3 |
| family | Psittacidae |
| file_name | 355615_TSI_UNSW_H2KN2DRXY_GGTAACTCGC-TCACCAACTT |
| flowcell_id | H2KN2DRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20210414_TSI_UNSW_H2KN2DRXY |
| genus | Neophema |
| insert_size_range | 160.0 |
| institution_name | University of Sydney |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/357626 |
| library_index_id | UDP0035-UDP0035A_C05 |
| library_index_seq | GGTAACTCGC-TCACCAACTT |
| library_layout | paired end |
| library_location | UNSW |
| library_ng_ul | 15.6 |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2021-04-07 |
| library_prepared_by | Caitriona Murray |
| library_selection | PolyA |
| library_source | Transcriptomic |
| library_status | Library sequenced |
| library_strategy | ssRNA-seq |
| library_type | stranded mRNA |
| lifestage | adult |
| location_text | Priam Psitticulture Centre; 2 Australis Place, Queanbeyan, NSW 2623 |
| material_conc_ng_ul | 93.7 |
| material_extracted_by | Kate Farquharson; Emma Peel |
| material_extraction_date | 2020-09-02 |
| material_extraction_method | Qiagen RNeasy Mini Kit with DNAse treatment |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| n_libraries_pooled | 27.0 |
| order | Psittaciformes |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | Genome sequencing |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/355615 |
| sample_quality | High |
| scientific_name | Neophema chrysogaster |
| sequencing_facility | UNSW |
| sequencing_model | Illumina NovaSeq 6002 |
| sequencing_platform | Illumina |
| species | chrysogaster |
| specimen_id | 2035.0 |
| specimen_id_description | Studbook |
| state_or_region | New South Wales |
| taxon_id | 678581.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1062 |
| tissue_collection | University of Sydney_Carolyn Hogg |
| tissue_number | 2035_kidney |
| tissue_preservation | Preserved in RNAlater, frozen at -80C |
| tissue_type | Kidney |
| wild_captive | captive |
| work_order | 14009 |