Ghost bat, Transcriptome, Illumina FASTQ, Spleen
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-04-14 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | exact site coordinates should not be released to public as it is an important conservation site for ghost bats |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | The captured bat was clearly an older bat with very worn teeth, scarred wing membrane and a large notch missing from his ear. |
| associated_media | photos,videos |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1062/20210414_TSI_UNSW_H2KN2DRXY/ |
| ccg_jira_ticket | BPAOPS-1062 |
| certainty | Certain |
| class | Mammalia |
| collection_date | 2020-09-23 |
| collection_method | A ghost bat was captured using a mist net in open woodland in the vicinity of a known roost. Bat was lured into the mist net using a playback protocol designed by Nicola Hanrahan during her PhD research. Bat was removed from net immediately and placed int |
| collector | Nicola Hanrahan (Western Sydney University/Charles Darwin University), Simon Hollamby (Veterinary Surgeon; Territory Wildlife Park), Damian Stanioch (NT Parks & Wildlife), Sam Banks (Charles Darwin University), Brenton von Takach Dukai (Charles Darwin Uni |
| collector_sample_id | PC43 |
| common_name | Ghost bat |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Nicola Hanrahan |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358738 |
| date_of_transfer | 2021-04-14 |
| date_of_transfer_to_archive | 2021-04-15 |
| death_date | 2020-09-23 |
| facility_project_code | Q0005470 |
| facility_sample_id | FAR9104A2 |
| family | Megadermatidae |
| file_name | 355625_TSI_UNSW_H2KN2DRXY_CGTTATTCTA-AACCTTATGG |
| flowcell_id | H2KN2DRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20210414_TSI_UNSW_H2KN2DRXY |
| genus | Macroderma |
| habitat | Undulating hills, Open Eucalypt woodland, historic gold mining area with multiple mine shafts. |
| insert_size_range | 160.0 |
| institution_name | Charles Darwin University |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/357636 |
| library_index_id | UDP0045-UDP0045A_E06 |
| library_index_seq | CGTTATTCTA-AACCTTATGG |
| library_layout | paired end |
| library_location | UNSW |
| library_ng_ul | 4.1 |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2021-04-07 |
| library_prepared_by | Caitriona Murray |
| library_selection | PolyA |
| library_source | Transcriptomic |
| library_status | Library sequenced |
| library_strategy | ssRNA-seq |
| library_type | stranded mRNA |
| lifestage | adult |
| location_text | Pine Creek Township, Northern Territroy |
| material_conc_ng_ul | 74.8 |
| material_extracted_by | Elspeth McLennan; Kate Farquharson |
| material_extraction_date | 2020-12-07 |
| material_extraction_method | Qiagen RNeasy Mini Kit with DNAse treatment |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Genitals |
| n_libraries_pooled | 27.0 |
| order | Chiroptera |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | Genome sequencing |
| sample_custodian | Nicola Hanrahan |
| sample_id | 102.100.100/355625 |
| sample_quality | Good |
| scientific_name | Macroderma gigas |
| sequencing_facility | UNSW |
| sequencing_model | Illumina NovaSeq 6012 |
| sequencing_platform | Illumina |
| source_population | Pine Creek |
| species | gigas |
| specimen_id | MG_PC43 |
| specimen_id_description | scientific name acronym_researcher assigned sample ID |
| state_or_region | Northern Territory |
| taxon_id | 9411.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1062 |
| tissue_collection | Charles Darwin University_Nicola Hanrahan |
| tissue_number | MG_PC43_spleen |
| tissue_preservation | RNAlater - Placed in tube with 1ml RNALater,flash frozen in liquid nitrogen, transported on dry ice and stored in -80 freezer |
| tissue_type | Spleen |
| wild_captive | wild_caught |
| work_order | 14009 |