Swan galaxias, Transcriptome, Illumina FASTQ, Midsection
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-04-14 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Open Access |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1062/20210414_TSI_UNSW_H2KN2DRXY/ |
| ccg_jira_ticket | BPAOPS-1062 |
| class | Actinopteri |
| collection_date | 2021-01-11 |
| collection_method | Electrofishing |
| collector | Rob Freeman |
| collector_sample_id | Fish1 |
| common_name | Swan galaxias |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Bruce Deagle |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358739 |
| date_of_transfer | 2021-04-14 |
| date_of_transfer_to_archive | 2021-04-15 |
| death_date | 2021-01-11 |
| decimal_latitude_public | -41.786792 |
| decimal_longitude_public | 147.031298 |
| facility_project_code | Q0005470 |
| facility_sample_id | FAR9073A15 |
| family | Galaxiidae |
| file_name | 355627_TSI_UNSW_H2KN2DRXY_GTCCTGGATA-TTCGCCACCG |
| flowcell_id | H2KN2DRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20210414_TSI_UNSW_H2KN2DRXY |
| genus | Galaxias |
| habitat | Stream |
| insert_size_range | 160.0 |
| institution_name | CSIRO Australian National Fish Collection (ANFC) |
| latitude | -41.786792 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/357638 |
| library_index_id | UDP0047-UDP0047A_G06 |
| library_index_seq | GTCCTGGATA-TTCGCCACCG |
| library_layout | paired end |
| library_location | UNSW |
| library_ng_ul | 6.02 |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2021-04-07 |
| library_prepared_by | Caitriona Murray |
| library_selection | PolyA |
| library_source | Transcriptomic |
| library_status | Library sequenced |
| library_strategy | ssRNA-seq |
| library_type | stranded mRNA |
| lifestage | juvenile |
| location_text | Dairy_Creek |
| longitude | 147.031298 |
| material_conc_ng_ul | 436.0 |
| material_extracted_by | Elspeth McLennan; Kate Farquharson |
| material_extraction_date | 2021-02-03 |
| material_extraction_method | Qiagen RNeasy Mini Kit with DNAse treatment |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 27.0 |
| order | Galaxiiformes |
| phenotypic_sex | unknown |
| phylum | Chordata |
| sample_custodian | Bruce Deagle |
| sample_id | 102.100.100/355627 |
| sample_quality | High |
| scientific_name | Galaxias fontanus |
| sequencing_facility | UNSW |
| sequencing_model | Illumina NovaSeq 6014 |
| sequencing_platform | Illumina |
| source_population | NaturalPop |
| species | fontanus |
| specimen_id | Fish1 |
| specimen_id_description | Field Notebook |
| state_or_region | Tasmania |
| taxon_id | 89556.0 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1062 |
| tissue_collection | ANFC |
| tissue_number | Fish1_midsection |
| tissue_preservation | RNAlater |
| tissue_type | Midsection |
| wild_captive | wild |
| work_order | 14009 |