Shark bay bandicoot (formerly Western barred bandicoot), Transcriptome, Illumina FASTQ, Blood
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-04-14 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | PBDHI2002 had occular crusting, fur pluck from crusting lesion on dorsal rump |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1062/20210414_TSI_UNSW_H2KN2DRXY/ |
| ccg_jira_ticket | BPAOPS-1062 |
| certainty | Certain |
| class | Mammalia |
| collection_date | 2020-10-31 |
| collection_method | Femoral vein under anaesthesia |
| collector | Fiona Knox, Murdoch University |
| collector_sample_id | PBDHI2001_PBDHI2002 |
| common_name | Shark bay bandicoot (formerly Western barred bandicoot) |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Kate Farquharson |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358740 |
| date_of_transfer | 2021-04-14 |
| date_of_transfer_to_archive | 2021-04-15 |
| decimal_latitude_public | -25.9 |
| decimal_longitude_public | 113.1 |
| facility_project_code | Q0005470 |
| facility_sample_id | FAR9118A1 |
| family | Peramelidae |
| file_name | 355632_TSI_UNSW_H2KN2DRXY_TGATGTAAGA-AAGGACGCAC |
| flowcell_id | H2KN2DRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20210414_TSI_UNSW_H2KN2DRXY |
| genus | Perameles |
| habitat | Coastal shrubland |
| insert_size_range | 160.0 |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| latitude | -25.9 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/357643 |
| library_index_id | UDP0052-UDP0052A_D07 |
| library_index_seq | TGATGTAAGA-AAGGACGCAC |
| library_layout | paired end |
| library_location | UNSW |
| library_ng_ul | 4.92 |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2021-04-07 |
| library_prepared_by | Caitriona Murray |
| library_selection | PolyA |
| library_source | Transcriptomic |
| library_status | Library sequenced |
| library_strategy | ssRNA-seq |
| library_type | stranded mRNA |
| lifestage | adult |
| location_text | Dirk Hartog Island National Park |
| longitude | 113.1 |
| material_conc_ng_ul | 300.0 |
| material_extracted_by | Emma Peel |
| material_extraction_date | 2021-02-15 |
| material_extraction_method | Qiagen RNAprotect animal blood kit with DNAse treatment |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Observation |
| n_libraries_pooled | 27.0 |
| order | Peramelemorphia |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Kate Farquharson |
| sample_id | 102.100.100/355632 |
| sample_quality | High |
| scientific_name | Perameles bougainville |
| sequencing_facility | UNSW |
| sequencing_model | Illumina NovaSeq 6019 |
| sequencing_platform | Illumina |
| source_population | Dirk Hartog Island_Dorre Island |
| species | bougainville |
| specimen_id | 982000405916592_982000405913498_pooled |
| specimen_id_description | Microchip |
| state_or_region | Western Australia |
| taxon_id | 120735.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1062 |
| tissue_collection | Dirk Hartog Island National Park Ecological Restoration Project |
| tissue_number | 982000405916592_982000405913498_pooled_blood |
| tissue_preservation | Stored in RNEasy protect blood tubes, frozen at -80C |
| tissue_type | Blood |
| wild_captive | wild_caught |
| work_order | 14009 |