Regent honeyeater, Transcriptome, Illumina FASTQ, Liver
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-04-14 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1062/20210414_TSI_UNSW_H2KN2DRXY/ |
| birth_date | 2020-09-20 |
| ccg_jira_ticket | BPAOPS-1062 |
| certainty | Certain |
| class | Aves |
| collection_date | 2020-10-28 |
| collection_method | Medical euthanasia due to poor prognosis |
| collector | Lydia Tong, Taronga |
| collector_sample_id | TARZ-13825.1 |
| common_name | Regent honeyeater |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Jo Day |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358741 |
| date_of_transfer | 2021-04-14 |
| date_of_transfer_to_archive | 2021-04-15 |
| death_date | 2020-10-28 |
| decimal_latitude_public | -33.84 |
| decimal_longitude_public | 151.24 |
| facility_project_code | Q0005470 |
| facility_sample_id | FAR9073A23 |
| family | Meliphagidae |
| file_name | 355635_TSI_UNSW_H2KN2DRXY_CTGAGGAATA-AGTGGTTAAG |
| flowcell_id | H2KN2DRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20210414_TSI_UNSW_H2KN2DRXY |
| genus | Anthochaera |
| insert_size_range | 160.0 |
| institution_name | Taronga Conservation Society Australia |
| latitude | -33.84 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/357646 |
| library_index_id | UDP0055-UDP0055A_G07 |
| library_index_seq | CTGAGGAATA-AGTGGTTAAG |
| library_layout | paired end |
| library_location | UNSW |
| library_ng_ul | 2.04 |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2021-04-07 |
| library_prepared_by | Caitriona Murray |
| library_selection | PolyA |
| library_source | Transcriptomic |
| library_status | Library sequenced |
| library_strategy | ssRNA-seq |
| library_type | stranded mRNA |
| lifestage | juvenile |
| location_text | Taronga Zoo, Bradleys Head Road, Mosman, NSW 2088 |
| longitude | 151.24 |
| material_conc_ng_ul | 542.0 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2021-02-22 |
| material_extraction_method | Qiagen RNeasy Mini Kit with DNAse treatment |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| n_libraries_pooled | 27.0 |
| order | Passeriformes |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | Genome sequencing |
| sample_custodian | Jo Day |
| sample_id | 102.100.100/355635 |
| sample_quality | High |
| scientific_name | Anthochaera phrygia |
| sequencing_facility | UNSW |
| sequencing_model | Illumina NovaSeq 6022 |
| sequencing_platform | Illumina |
| source_population | Taronga Zoo |
| species | phrygia |
| specimen_id | WYR20-16179 |
| specimen_id_description | Species360 (GAN) number |
| state_or_region | New South Wales |
| taxon_id | 2020318.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1062 |
| tissue_collection | Taronga Conservation Society Australia |
| tissue_number | WYR20-16179_liver |
| tissue_preservation | RNAlater |
| tissue_type | Liver |
| wild_captive | captive |
| work_order | 14009 |