Kroombit tinkerfrog, Carolyn Hogg (USYD), Illumina FASTQ, Whole tadpole
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-06-28 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Open Access |
| analysis_software | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1100/20210628_TSI_AGRF_HFVFMDRXY/ |
| ccg_jira_ticket | BPAOPS-1100 |
| certainty | Certain |
| class | Amphibia |
| collection_date | 2021-04-19 |
| collection_method | Medical euthanasia |
| collector | Andrew Hill |
| common_name | Kroombit tinkerfrog |
| country | Australia |
| data_context | Carolyn Hogg (USYD) |
| data_custodian | pleione |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358744 |
| date_of_transfer | 2021-06-28 |
| date_of_transfer_to_archive | 2021-06-29 |
| death_date | 2021-04-19 |
| description | NovaSeq 6000; Illumina DNA PCR-Free Prep; Dataset ID 358744 |
| family | Myobatrachidae |
| file_type | fastq.gz |
| flowcell_id | HFVFMDRXY |
| flowcell_type | S1-300 |
| folder_name | 20210628_TSI_AGRF_HFVFMDRXY |
| genus | Taudactylus |
| habitat | Semi-aquatic |
| insert_size_range | 450.0 |
| institution_name | University of Sydney |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 102.100.100/357733 |
| library_index_id | UDP0151-F & UDP0151-R |
| library_index_seq | TTGTATCAGG-TGGCCTCTGT |
| library_layout | PE |
| library_pcr_cycles | 0.0 |
| library_type | Reference genome |
| lifestage | Tadpole |
| location_text | Currumbin |
| material_conc_ng_ul | 301.5 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2021-04-29 |
| material_extraction_method | Circulomics Kit ("Nanobind Tissue Big DNA Kit v1.0 11/19") |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| n_libraries_pooled | 1.0 |
| order | Anura |
| phenotypic_sex | unknown |
| phylum | Chordata |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/355722 |
| sample_quality | good |
| scientific_name | Taudactylus pleione |
| sequencing_facility | AGRF |
| sequencing_model | 6000.0 |
| sequencing_platform | NovaSeq |
| source_population | Currumbin Wildlife Sanctuary |
| species | pleione |
| specimen_id | KTF_2-80 |
| specimen_id_description | Currumbin Wildlife Sanctuary euthanasia |
| state_or_region | Queensland |
| taxon_id | 2424606_GBIFdatabase |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1100 |
| tissue_collection | Michael Vella - captive euthanasia |
| tissue_number | KTF_2-80_pooledwholebody |
| tissue_preservation | Flash frozen at -80C |
| tissue_type | Whole tadpole |
| wild_captive | captive |