Bellinger River snapping turtle, Reference Genome, Illumina FASTQ, Brain
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-08-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Open Access |
| analysis_software | bcl2fastq |
| analysis_software_version | v2.0 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1126/20210726_TSI_UNSW_HCWGYDRXY/ |
| ccg_jira_ticket | BPAOPS-1126 |
| cell_postion | n/a |
| certainty | Certain |
| class | Reptilia |
| collection_date | 2021-05-25 |
| collection_method | Medical euthanasia |
| collector | Kimberly Vinette Herrin |
| common_name | Bellinger River snapping turtle |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Carolyn Hogg |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358747 |
| date_of_transfer | 2021-08-06 |
| date_of_transfer_to_archive | 2021-08-09 |
| death_date | 2021-05-25 |
| description | NovaSeq 6000; transcriptomics, Dataset ID 358746, 358747, 358748 |
| dna_treatment | n/a |
| facility_project_code | Q0006594 |
| facility_sample_id | MCL9391A5 |
| family | Chelidae |
| file_type | fastq.gz |
| flowcell_id | HCWGYDRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20210726_TSI_UNSW_HCWGYDRXY |
| genus | Myuchelys |
| habitat | Aquatic |
| insert_size_range | ~160 |
| institution_name | University of Sydney |
| library_construction_protocol | Illumina mRNA prep ligation |
| library_id | 102.100.100/358215 |
| library_index_id | UDP0140 |
| library_index_seq | TACGTGAAGG-CTAATAACCG |
| library_layout | Paired end |
| library_location | RCG |
| library_ng_ul | 48.8 |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2021-07-22 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | Hatchling |
| location_text | Mosman |
| material_conc_ng_ul | 187.0 |
| material_extracted_by | Emma Peel |
| material_extraction_date | 2021-05-26 |
| material_extraction_method | Qiagen Rneasy Mini Kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | n/a |
| n_libraries_pooled | 23.0 |
| order | Testudines |
| phenotypic_sex | unknown |
| phylum | Chordata |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/356204 |
| sample_quality | Good |
| scientific_name | Myuchelys georgesi |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Taronga Zoo |
| species | georgesi |
| specimen_id | C10031 |
| specimen_id_description | Euthanised specimen from Taronga Zoo |
| state_or_region | New South Wales |
| taxon_id | 1041117 |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1126 |
| tissue_collection | Captive individual euthanised for medical reasons |
| tissue_number | C10031_brain |
| tissue_preservation | RNAlater |
| tissue_type | Brain |
| wild_captive | captive |
| work_order | 13017 |