native guava, resequencing, Illumina FASTQ, leaf tissue
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-08-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1124/20210726_TSI_UNSW_HG2H3DSX2/ |
| ccg_jira_ticket | BPAOPS-1124 |
| cell_postion | n/a |
| class | Magnoliopsida |
| collection_date | 2019-11-07 |
| collector | E. Kirsner |
| common_name | native guava |
| country | Australia |
| data_context | resequencing |
| data_custodian | Maurizio Rossetto |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358749 |
| date_of_transfer | 2021-08-06 |
| date_of_transfer_to_archive | 2021-08-09 |
| description | native guava resequencing |
| dna_treatment | n/a |
| facility_project_code | Q0005640 |
| facility_sample_id | ROS9371_A71 |
| family | Myrtaceae |
| file_type | fastq.gz |
| flowcell_id | HG2H3DSX2 |
| flowcell_type | NovaSeq S4 |
| folder_name | 20210726_TSI_UNSW_HG2H3DSX2 |
| genus | Rhodomyrtus |
| insert_size_range | ~350 bp |
| institution_name | Research Centre for Ecosystem Resilience, Australian Institute of Botanical Science |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 102.100.100/358290 |
| library_index_id | Nextera_UDI_SetD_G09_UDP0359 |
| library_index_seq | TCGTTGCTGC-TTCACGAGAC |
| library_layout | paired end |
| library_location | RCG |
| library_ng_ul | 0.21 |
| library_pcr_cycles | 5.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2021-07-22 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Illumina DNA Prep |
| library_type | WGS |
| location_text | Cape Byron |
| material_conc_ng_ul | 11.4 |
| material_extracted_by | Samantha Yap |
| material_extraction_date | 2021-05-19 |
| material_extraction_method | modified CTAB method |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | n/a |
| n_libraries_pooled | 80.0 |
| order | Myrtales |
| phylum | Streptophyta |
| sample_custodian | RBG-SYD |
| sample_id | 102.100.100/355710 |
| scientific_name | Rhodomyrtus psidioides |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | psidioides |
| specimen_id | NSW1074559 |
| specimen_id_description | Rhodomyrtus psidioides, RBGSYD acession: P2019-0606 |
| state_or_region | New South Wales |
| taxon_id | 375277.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1124 |
| tissue_collection | NSW1074559_RBGSYD |
| tissue_number | NSW1074559_RBG_leaf |
| tissue_preservation | silica dried |
| tissue_type | leaf tissue |