green and golden bell frog, Reference Genome, Illumina FASTQ, blood
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-09-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | No restrictions |
| analysis_software | NovaSeq Control Software (NCS); Real Time Analysis (RTA); bcl2fastq |
| analysis_software_version | v1.7.0; v3.4.4;2.20.0.422 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1134/20210927_TSI_AGRF_HNCMHDSX2/ |
| ccg_jira_ticket | BPAOPS-1134 |
| certainty | certain |
| class | Amphibia |
| collection_method | Frog was removed from outdoor enclosure by hand |
| collector | Anthony Waddle, University of Melbourne/Macquarie University |
| collector_sample_id | MaleTub17 |
| common_name | green and golden bell frog |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Anthony Waddle |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358750 |
| date_of_transfer | 2021-09-27 |
| date_of_transfer_to_archive | 2021-09-28 |
| decimal_latitude_public | -32.86 |
| decimal_longitude_public | 151.73 |
| description | NovaSeq 6000; Illumina DNA PCR-Free Prep; Dataset ID 358750 |
| facility_project_code | CAGRF21077736 |
| family | Pelodryadidae |
| file_type | fastq.gz |
| flowcell_id | HNCMHDSX2 |
| flowcell_type | S4 |
| folder_name | 20210927_TSI_AGRF_HNCMHDSX2 |
| genus | Litoria |
| habitat | Waste emplacement dam |
| insert_size_range | 450.0 |
| institution_name | Macquarie University |
| latitude | -32.86 |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 102.100.100/358300 |
| library_index_id | UDP0046-F & UDP0046-R |
| library_index_seq | AGATCCATTA-TGGTAGAGAT |
| library_layout | PE |
| library_pcr_cycles | 0.0 |
| library_type | Reference genome |
| lifestage | adult organism |
| location_text | Kooragang Island |
| longitude | 151.73 |
| material_extracted_by | Anthony Waddle |
| material_extraction_method | circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | conspicuous sexual characteristics such as nuptual pads and coloured throat patch. |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Anthony Waddle, Rick Shine, Simon Clulow |
| sample_id | 102.100.100/356208 |
| sample_quality | fresh |
| sample_type | Blood |
| scientific_name | Litoria aurea |
| scientific_name_authorship | Lesson, 1829 |
| scientific_name_note | sometimes called Ranoidea aurea |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | v1.5 300 cycles |
| sequencing_model | 6000.0 |
| sequencing_platform | NovaSeq |
| source_population | Kooragang Island |
| species | aurea |
| specimen_id | MQ-MLA017 |
| specimen_id_description | Specimen is a male Litoria aurea from Macquarie University Fauna Park Colony taken from tub 17 in July 2021 |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 312085.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1134 |
| tissue_collection | Litoria aurea colony |
| tissue_collection_type | University |
| tissue_number | MQ-MLA017Blood |
| tissue_preservation | none |
| tissue_preservation_temperature | 23.0 |
| tissue_type | blood |
| wild_captive | captive |
| work_order | 14013 |