there is no common name listed, Reference genome, Illumina FASTQ, shoot
Dataset size is: 0.00 Bit
Data and Resources
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
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460862_TSI_UNSW_HHFYHAFX5_GATCTA... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-03-22 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | No restrictions |
| analysis_software | bcl2fastq |
| analysis_software_version | 1.37.0 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1371/20230310_TSI_UNSW_HHFYHAFX5/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1371 |
| certainty | NA |
| class | Equisetopsida |
| collection_method | snap freeze in liquid nitrogen from live plant |
| collector | Ton Stewart, University of the Sunshine Coast |
| common_name | there is no common name listed |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Ton Stewart |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358812 |
| date_of_transfer | 2023-03-23 |
| date_of_transfer_to_archive | 2023-03-24 |
| description | Fontainea transcriptomes |
| download | researcher informed |
| facility_project_code | Q0010583 |
| facility_sample_id | STE11778A3 |
| family | Euphorbiaceae |
| file_type | fastq |
| flowcell_id | HHFYHAFX5 |
| flowcell_type | NextSeq Mid Output |
| folder_name | 20230310_TSI_UNSW_HHFYHAFX5 |
| genotypic_sex | NA |
| genus | Fontainea |
| habitat | rain forest |
| health_state | healthy young plant |
| insert_size_range | 75bp PE |
| institution_name | University of the Sunshine Coast |
| library_construction_protocol | TruSeq Stranded Total RNA with Ribo-Zero Plant |
| library_id | 102.100.100/460862 |
| library_index_id | 008C IDT |
| library_index_id_dual | 008C IDT |
| library_index_seq | GATCTATC |
| library_index_seq_dual | AGCCTCAT |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 14.6 |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2023-02-27 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | RANDOM |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-seq |
| library_type | Illumina-transcriptomics |
| location_text | only two sites just north of Coffs Harbour on the NSW mid-north coast, Boambee Valley, along the coastal foothills to Coffs Creek, the Korora Basin |
| material_extracted_by | Ton Stewart |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| n_libraries_pooled | 3.0 |
| order | Malpighiales |
| phenotypic_sex | NA |
| phylum | Streptophyta |
| sample_custodian | Ton Stewart, Gabe Conroy |
| sample_id | 102.100.100/458825 |
| sample_quality | don't know yet |
| sample_type | tissue sample |
| scientific_name | Fontainea Coffs harbour |
| scientific_name_authorship | A.S.Benwell 341 |
| sequencing_facility | UNSW |
| sequencing_model | Illumina NextSeq 550 |
| sequencing_platform | ILLUMINA |
| species | Coffs harbour |
| specimen_id | UniSC FC0002 |
| specimen_id_description | UniSC is where the plant propagate, FC is Fontainea Coffs Harbour, number is plant number |
| state_or_region | New South Wales |
| subspecies | None |
| taxon_id | NSW1102027 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1371 |
| tissue_collection | Botany |
| tissue_collection_type | living collection |
| tissue_number | UniSC FC0002_shoot1 |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80C |
| tissue_type | shoot |
| work_order | 14045 |