Howard River Toadlet, Transcriptome, Illumina FASTQ, Kidney/Gonads
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-10-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1488/20230929_TSI_UNSW_22C5YVLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1488 |
| certainty | certain |
| class | Amphibia |
| collection_date | 2023-02-16 |
| collection_method | by hand |
| collector | Renee Catullo, Peter McDonald, Tony Griffiths |
| common_name | Howard River Toadlet |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Renee Catullo |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358840 |
| date_of_transfer | 2023-10-09 |
| date_of_transfer_to_archive | 2023-10-09 |
| death_date | 2023-02-17 |
| decimal_latitude_public | -12.44 |
| decimal_longitude_public | 131.04 |
| description | Transcriptomes: Howard River Toadlet (Uperoleia daviesae), KI Brown Thornbill (Acanthiza pusilla) |
| facility_project_code | Q0011702 |
| facility_sample_id | CAT12320A3 |
| family | Myobatrachidae |
| file_type | fastq.gz |
| flowcell_id | 22C5YVLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20230929_TSI_UNSW_22C5YVLT3 |
| genotypic_sex | not determined |
| genus | Uperoleia |
| habitat | sandsheet heath |
| health_state | unknown |
| insert_size_range | 150 PE |
| institution_name | UWA Catullo Lab internal identifier |
| latitude | -12.44 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/462458 |
| library_index_id_dual | UDP0016 |
| library_index_seq_dual | CGGTTACGGC-CTATAGTCTT |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 1.048753084 |
| library_pcr_cycles | 10.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2023-08-23 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult organism |
| location_text | Willard Rd, Shoal Bay, Darwin |
| longitude | 131.04 |
| material_extracted_by | Garvin |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | calling individual |
| n_libraries_pooled | 25.0 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Renee Catullo |
| sample_id | 102.100.100/460416 |
| sample_quality | sampled for this purpose |
| sample_type | tissue sample |
| scientific_name | Uperoleia daviesae |
| scientific_name_authorship | Young, Tyler & Kent, 2005 |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| species | daviesae |
| specimen_id | Up1333 |
| specimen_id_description | UWA Catullo Lab internal identifier |
| state_or_region | Northern Territory |
| taxon_id | 1534773.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1488 |
| tissue_collection | UWA Catullo Lab - private |
| tissue_collection_type | university |
| tissue_number | Up1333_K |
| tissue_preservation | "RNA later then -80" |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Kidney/Gonads |
| wild_captive | wild |
| work_order | 14055 |