Genome resequencing, Illumina FASTQ
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Data and Resources
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
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463486_TSI_AGRF_22GHFLLT3_TGTGAC... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-11-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert |
| analysis_software_version | v1.2.0.28691; v4.6.7; v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1524/20231124_TSI_AGRF_CAGRF23091272_22GHFLLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1524 |
| data_context | Genome resequencing |
| data_custodian | Kevin Rowe |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358863 |
| date_of_transfer | 2023-11-24 |
| date_of_transfer_to_archive | 2023-11-27 |
| description | Mastacomys fuscus |
| facility_project_code | CAGRF23091272 |
| facility_sample_id | 15097-37 |
| file_type | fastq.gz |
| flowcell_id | 22GHFLLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20231124_TSI_AGRF_CAGRF23091272_22GHFLLT3 |
| genus | Mastacomys |
| insert_size_range | 351 bp ± 100 bp |
| library_construction_protocol | IDT xGen cfDNA & FFPE Library Preperation |
| library_id | 102.100.100/463486 |
| library_index_id_dual | IDT8_i7_37 & IDT8_i5_37 |
| library_index_seq_dual | TGTGACTG-GATAGGCT |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 20.8 |
| library_pcr_cycles | 7.0 |
| library_prep_date | 2023-10-23 |
| library_prepared_by | SW |
| library_source | gDNA |
| library_type | Illumina-shortread |
| sample_id | 102.100.100/462940 |
| scientific_name | Mastacomys fuscus |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP-SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | fuscus |
| specimen_id | A1565 |
| ticket | BPAOPS-1524 |
| tissue_number | A1565 |