Night parrot, Population genetics, Illumina FASTQ
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-05-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| analysis_software_version | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-shortread/BPAOPS-1276/20220610_TSI_AGRF_HK5N7DSX3/ |
| ccg_jira_ticket | BPAOPS-1276 |
| certainty | NA |
| class | Aves |
| common_name | Night parrot |
| data_context | Population genetics |
| data_custodian | Jeremy Austin |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358775 |
| date_of_transfer | 2022-05-16 |
| date_of_transfer_to_archive | 2022-06-12 |
| description | Night Parrot Genome (dataset ID: 358775) - corrected sample labels |
| facility_project_code | CAGRF21025525 |
| family | Psittaculidae |
| file_type | .fast.gz |
| flow_cell_id | HK5N7DSX3 |
| flowcell_id | HK5N7DSX3 |
| flowcell_type | S4 |
| folder_name | 20220610_TSI_AGRF_HK5N7DSX3 |
| genotypic_sex | NA |
| genus | Pezoporus |
| insert_size_range | <350 |
| library_comments | Failed initial QC |
| library_construction_protocol | IDT xGen cfDNA & FFPE Library Preperation |
| library_id | 407586 |
| library_index_id | IDT8_i7_22 & IDT8_i5_22 |
| library_index_sequence | TCGCTGTT-CAAGTCGT |
| library_layout | Paired End |
| library_location | Australian Genome Research Facility |
| library_ng_ul | 5.39 |
| library_pcr_cycles | 13.0 |
| library_prep_date | 2022-05-10 |
| library_prepared_by | Australian Genome Research Facility |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_type | WGS |
| location_text | Diamantina NP |
| material_conc_ng_ul | 30.0 |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| n_libraries_pooled | 21.0 |
| order | Psittaciformes |
| phenotypic_sex | NA |
| phylum | Chordata |
| sample_id | 102.100.100/359999 |
| scientific_name | Pezoporus occidentalis |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | NovaSeq 6000 |
| sequencing_platform | Illumina |
| species | occidentalis |
| specimen_id | QM O.32613 |
| state_or_region | Queensland |
| taxon_id | 407982.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1276 |
| work_order | 14026 |