Eastern underground orchid, Reference genome, PromethION, 11 flowers from single inflorescence
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until July 10, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-07-10 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| access_rights | Location information restricted |
| ala_specimen_url | https://bie.ala.org.au/species/https://id.biodiversity.org.au/taxon/apni/5141299 |
| analysis_software | MinKNOW 25.03.7 |
| analysis_software_version | ONT long reads |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ont-promethion/BPAOPS-1826/20250630_TSI_BRF_PBE66586/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1826 |
| cell_postion | 1D |
| certainty | certain |
| class | Magnoliopsida |
| collection_date | 2024-09-27 |
| collection_method | picked |
| collector | Rod Peakall |
| collector_sample_id | 24007.0 |
| common_name | Eastern underground orchid |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Rod Peakall |
| data_type | PromethION |
| dataset_id | 102.100.100/629207 |
| date_of_transfer | 2025-07-10 |
| date_of_transfer_to_archive | 2025-07-14 |
| dna_treatment | Blue pippin 20 Kb size selection |
| experimental_design | Super-accurate basecalling v4.3.0, 400 bps |
| facility_project_code | ONT_gDNA169_959 |
| facility_sample_id | 959.0 |
| family | Orchidaceae |
| file_type | pod5 bvz |
| flowcell_id | PBE66586 |
| flowcell_type | FLO-PRO114M |
| folder_name | 20250630_TSI_BRF_PBE66586 |
| genus | Rhizanthella |
| habitat | Eucalyptus forest |
| insert_size_range | 27000.0 |
| institution_name | ANU |
| library_construction_protocol | Ligation prep with SQK-LSK114 |
| library_id | 102.100.100/682094 |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 33.2 |
| library_prep_date | 2025-06-19 |
| library_prepared_by | Carolina Correa-Ospina |
| library_selection | random |
| library_source | genomic |
| library_strategy | WGS |
| library_type | ONT-PromethION |
| lifestage | adult |
| location_text | Bulahdelah (precise details withhold as a condition of permit) |
| material_conc_ng_ul | 222.0 |
| material_extracted_by | Ashley Jones |
| material_extraction_date | 2025-06-05 |
| material_extraction_method | HMW DNA extracted using the following bead based method: Jones et al (2021) HMW DNA extraction, clean-up and size selection for long-read sequencing. PLOS ONE 16(7): e0253830. https://doi.org/10.1371/journal.pone.0253830 |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-03 |
| metadata_revision_filename | 20250704_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 4d8h |
| order | Asparagales |
| phenotypic_sex | hermaphrodite |
| phylum | Streptophyla |
| sample_custodian | Rod Peakall |
| sample_id | 102.100.100/670090 |
| sample_type | Single inflorescence |
| scientific_name | Rhizanthella slateri |
| scientific_name_authorship | (Rupp) M.A.Clem. & P.J.Cribb, 1984 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SQK-LSK114M |
| sequencing_model | ONT PromethION |
| sequencing_platform | Oxford Nanopore |
| species | slateri |
| specimen_id | RHIZslat2401 |
| specimen_id_description | Peakall lab unique inflorescence field collection number |
| state_or_region | New South Wales |
| taxon_id | 177053.0 |
| taxonomic_group | plant |
| ticket | BPAOPS-1826 |
| tissue_collection | Peakall lab field collection |
| tissue_collection_type | Living in wild |
| tissue_number | RHIZslat2401-Flowers-24007 |
| tissue_preservation | liquid nitrogen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | 11 flowers from single inflorescence |
| wild_captive | wild |
| work_order | 14102.0 |