Kroombit tinkerfrog, Reference genome, Pacbio HiFi, Whole tadpole
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-10-19 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Open Access |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119588 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1150/20211013_TSI_CAGRF21077606_DA110367/358219_TSI_AGRF_DA110367_HiFi_metadata/ |
| cell_postion | A01 |
| certainty | Certain |
| class | Amphibia |
| collection_date | 2021-04-19 |
| collection_method | Medical euthanasia |
| collector | Andrew Hill |
| common_name | Kroombit tinkerfrog |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg (USYD) |
| data_type | Pacbio HiFi |
| dataset_id | 102.100.100/358761 |
| date_of_transfer | 2021-10-19 |
| date_of_transfer_to_archive | 2021-10-20 |
| death_date | 2021-04-19 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_sample_id | 355722.0 |
| family | Myobatrachidae |
| file_type | BAM |
| flowcell_id | DA110367 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20211013_TSI_CAGRF21077606_DA110367 |
| genus | Taudactylus |
| habitat | Semi-aquatic |
| insert_size_range | 14000.0 |
| institution_name | University of Sydney |
| library_comments | Library Sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/358219 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 24.3 |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2021-09-05 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | Tadpole |
| location_text | Currumbin |
| material_conc_ng_ul | 301.5 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2021-04-29 |
| material_extraction_method | Circulomics Kit ("Nanobind Tissue Big DNA Kit v1.0 11/19") |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | 30HRS |
| n_libraries_pooled | 1.0 |
| order | Anura |
| phenotypic_sex | unknown |
| phylum | Chordata |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/355722 |
| sample_quality | good |
| scientific_name | Taudactylus pleione |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Currumbin Wildlife Sanctuary |
| species | pleione |
| specimen_id | KTF_2-80 |
| specimen_id_description | Currumbin Wildlife Sanctuary euthanasia |
| state_or_region | Queensland |
| taxon_id | 2424606_GBIFdatabase |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1150 |
| tissue_collection | Michael Vella - captive euthanasia |
| tissue_number | KTF_2-80_pooledwholebody |
| tissue_preservation | Flash frozen at -80C |
| tissue_type | Whole tadpole |
| wild_captive | captive |