green and golden bell frog, Reference Genome, PacBio-HiFi, blood
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-07-31 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1194/20220210_TSI_CAGRF21108591_DA136087/359086_TSI_AGRF_DA136087_HiFi_metadata/ |
| cell_postion | C01 |
| certainty | certain |
| class | Amphibia |
| collection_method | Frog was removed from outdoor enclosure by hand |
| collector | Anthony Waddle, University of Melbourne/Macquarie University |
| collector_sample_id | MaleTub17 |
| common_name | green and golden bell frog |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Anthony Waddle |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358759 |
| date_of_transfer | 2022-02-16 |
| date_of_transfer_to_archive | 2022-02-17 |
| decimal_latitude_public | -32.86 |
| decimal_longitude_public | 151.73 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF21108591 |
| facility_sample_id | 359086.0 |
| family | Pelodryadidae |
| file_type | BAM |
| flowcell_id | DA136087 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20220210_TSI_CAGRF21108591_DA136087 |
| genus | Litoria |
| habitat | Waste emplacement dam |
| insert_size_range | 12500.0 |
| institution_name | Macquarie University |
| latitude | -32.86 |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/359086 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 90pM |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2021-12-15 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult organism |
| location_text | Kooragang Island |
| longitude | 151.73 |
| material_extracted_by | Anthony Waddle |
| material_extraction_method | circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | conspicuous sexual characteristics such as nuptual pads and coloured throat patch. |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Anthony Waddle, Rick Shine, Simon Clulow |
| sample_id | 102.100.100/356208 |
| sample_quality | fresh |
| sample_type | Blood |
| scientific_name | Litoria aurea |
| scientific_name_authorship | Lesson, 1829 |
| scientific_name_note | sometimes called Ranoidea aurea |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Kooragang Island |
| species | aurea |
| specimen_id | MQ-MLA017 |
| specimen_id_description | Specimen is a male Litoria aurea from Macquarie University Fauna Park Colony taken from tub 17 in July 2021 |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 312085.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1194 |
| tissue_collection | Litoria aurea colony |
| tissue_collection_type | University |
| tissue_number | MQ-MLA017Blood |
| tissue_preservation | none |
| tissue_preservation_temperature | 23.0 |
| tissue_type | blood |
| wild_captive | captive |
| work_order | 14020 |