Blue-tailed skink, Reference genome, PacBio-HiFi, Pooled_heart_kidney_midsection
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-04-20 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Open Access |
| analysis_software | SMRTtools |
| analysis_software_version | 10.1.0.119588 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1227/20220414_TSI_CAGRF22029627_DA149222/359702_TSI_AGRF_DA149222_HiFi_metadata/ |
| cell_postion | A01 |
| certainty | High |
| class | Reptilia |
| collection_date | 2021-11-17 |
| collection_method | Euthanasia |
| collector | Claire Ford |
| collector_sample_id | BTS541 |
| common_name | Blue-tailed skink |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358766 |
| date_of_transfer | 2022-04-20 |
| date_of_transfer_to_archive | 2022-04-24 |
| death_date | 2021-11-17 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | QAGRF22029627 |
| facility_sample_id | 359702.0 |
| family | Scincidae |
| file_type | BAM |
| flowcell_id | DA149222 |
| flowcell_type | SMRTcell 8M |
| folder_name | 20220414_TSI_CAGRF22029627_DA149222 |
| genotypic_sex | Male |
| genus | Cryptoblepharus |
| habitat | Forest |
| health_state | Poor - gout |
| insert_size_range | 10-20KB |
| institution_name | University of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/359702 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 15.8 |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2022-03-16 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult |
| location_text | Mosman |
| material_conc_ng_ul | 292.24 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2022-01-18 |
| material_extraction_method | Circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | 30HRS |
| n_libraries_pooled | 1.0 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | N/A |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/359888 |
| sample_quality | good |
| sample_type | Whole organism |
| scientific_name | Cryptoblepharus egeriae |
| scientific_name_authorship | Boulenger |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Taronga Zoo |
| species | egeriae |
| specimen_id | BTS541 |
| specimen_id_description | Clair Ford captive euthanasia |
| state_or_region | New South Wales |
| taxon_id | 2509230.0 |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1227 |
| tissue_collection | Claire Ford |
| tissue_collection_type | Living collection - Zoo |
| tissue_number | BTS541_pooled_heart_kidney_midsection |
| tissue_preservation | organs flash frozen at -80 and whole body 70% ethanol |
| tissue_preservation_temperature | organs -80, whole body 4 |
| tissue_type | Pooled_heart_kidney_midsection |
| wild_captive | captive |
| work_order | 14024 |