Angle-Stemmed Myrtle, Reference genome, PacBio-HiFi, Leaf
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-04-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.177059 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1384/20230419_TSI_AGRF_CAGRF230313931_DA235357/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_A01 |
| class | Magnoliopsida |
| collection_date | 2023-02-22 |
| collector | Lee-Anne Veage |
| collector_sample_id | UC1C2 |
| common_name | Angle-Stemmed Myrtle |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Stephanie Chen |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358813 |
| dataset_url | Stephanie Chen |
| date_of_transfer | 2023-04-27 |
| date_of_transfer_to_archive | 2023-04-28 |
| description | Gossia HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230313931 |
| facility_sample_id | 460863.0 |
| family | Myrtaceae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | DA235357 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20230419_TSI_AGRF_CAGRF230313931_DA235357 |
| genus | Gossia |
| health_state | No myrtle rust infection |
| insert_size_range | 14000.0 |
| institution_name | Botanic Gardens of Sydney |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell ® prep kit 3.0 |
| library_id | 102.100.100/460863 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 111.0 |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-04-04 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Leslie Parade Park, 31 Leslie Parade, Slacks Creek QLD |
| material_conc_ng_ul | 233.0 |
| material_extracted_by | Stephanie Chen | Karina Guo |
| material_extraction_date | 2023-03-01 |
| material_extraction_method | Sorbitol wash, CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| model_base_caller | NA |
| movie_length | 30HRS |
| n_libraries_pooled | 1.0 |
| order | Myrtales |
| phylum | Streptophyta |
| sample_id | 102.100.100/458826 |
| sample_type | Leaf tissue |
| scientific_name | Gossia gonoclada |
| scientific_name_authorship | (F.Muell. ex Benth.) N.Snow & Guymer |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | 11.1.0.154383 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Leslie Parade Park, 31 Leslie Parade, Slacks Creek QLD |
| species | gonoclada |
| specimen_id | NSW1091168 |
| specimen_id_description | Research Centre for Ecosystem Resilience, Botanic Gardens of Sydney identifier. Plant in ex situ collection at Logan City Council with field number UC1C2 |
| state_or_region | Queensland |
| taxon_id | 1619460.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1384 |
| tissue_collection | Logan City Council ex situ collection |
| tissue_number | NSW1091168_Gossia |
| tissue_preservation | Liquid nitrogen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Leaf |
| wild_captive | wild |
| work_order | 14046 |