Adamson's blown grass, Reference genome, PacBio-HiFi, leaf
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-10-04 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | no restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1490/20231005_TSI_AGRF_CAGRF230314018_m84073_230918_065334_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | C01 |
| certainty | certain |
| class | Magnoliopsida |
| collection_date | 2022-12-09 |
| collection_method | Plant dug up with shovel and transferred to pot. |
| collector | A.J. Brown, J. Levinson |
| collector_sample_id | AJB3046 |
| common_name | Adamson's blown grass |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Laura Simmons |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358817 |
| date_of_transfer | 2023-10-05 |
| date_of_transfer_to_archive | 2023-10-09 |
| decimal_latitude_public | -37.7 |
| decimal_longitude_public | 142.63 |
| description | Adamson's blown grass (Lachnagrostis adamsonii) (HiFi Revio) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230314018 |
| facility_sample_id | 462066.0 |
| family | Poaceae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230918_065334_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20231005_TSI_AGRF_CAGRF230314018_m84073_230918_065334_s2 |
| genotypic_sex | hermaphrodite |
| genus | Lachnagrostis |
| habitat | ephemeral creekline |
| health_state | healthy |
| insert_size_range | 16600.0 |
| institution_name | Royal Botanic Gardens Victoria |
| latitude | -37.7 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/462066 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-08-30 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Eastern Creek, Reedy Creek Station, Wickliffe |
| longitude | 142.63 |
| material_conc_ng_ul | 1450.0 |
| material_extracted_by | Gareth Holmes |
| material_extraction_date | 2023-03-03 |
| material_extraction_method | Standard CTAB with a sorbitol pre-wash. |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | examination under microscope |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Poales |
| phenotypic_sex | hermaphrodite |
| phylum | Streptophyta |
| sample_custodian | Melbourne Gardens |
| sample_id | 102.100.100/460029 |
| sample_type | leaf tissue sample |
| scientific_name | Lachnagrostis adamsonii subsp. adamsonii |
| scientific_name_authorship | Jacobs, 2002 |
| scientific_name_note | subspeciation described by Brown, 2015 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Eastern Creek, Reedy Creek Station, Wickliffe |
| species | adamsonii |
| specimen_id | 2527655A |
| specimen_id_description | National Herbarium of Victoria (MEL) |
| state_or_region | Victoria |
| subspecies | adamsonii |
| taxon_id | 1544614.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1490 |
| tissue_collection | Melbourne Gardens |
| tissue_collection_type | Living Collection |
| tissue_number | MEL2527655A_01 |
| tissue_preservation | frozen, pressed sheet |
| tissue_preservation_temperature | -20.0 |
| tissue_type | leaf |
| type_status | Representative sample from within distritbution. |
| wild_captive | wild |
| work_order | 14048 |