Western ground parrot, Reference genome, PacBio-HiFi, F-kidney-HMWDNA
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-07-25 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1444/20230721_TSI_AGRF_CAGRF230414583_m84073_230713_052805_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | 1.0 |
| class | Aves |
| collection_method | Necropsy |
| common_name | Western ground parrot |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Matyas Liptovszky |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358826 |
| date_of_transfer | 2023-07-26 |
| date_of_transfer_to_archive | 2023-07-26 |
| death_date | 2021-04-21 |
| description | King Island Brown Thornbill (HiFi Revio) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 460206.0 |
| family | Psittaculidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230713_052805_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230721_TSI_AGRF_CAGRF230414583_m84073_230713_052805_s1 |
| genus | Pezoporus |
| insert_size_range | 15000.0 |
| institution_name | Perth Zoo |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/462244 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-06-07 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | post mortem |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Psittaciformes |
| phenotypic_sex | female |
| phylum | Chordata |
| sample_custodian | Perth Zoo |
| sample_id | 102.100.100/460206 |
| sample_type | tissue |
| scientific_name | Pezoporus flaviventris |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | flaviventris |
| specimen_id | 21F02/B2104156 |
| state_or_region | Western Australia |
| subspecies | N/A |
| taxon_id | 889875.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1444 |
| tissue_preservation | Frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | F-kidney-HMWDNA |
| work_order | 14052 |