Victorian Grassland Earless Dragon, Reference genome, PacBio-HiFi, fibroblast cells grown from tail tip
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-11-01 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1509/20231031_TSI_AGRF_CAGRF230414583_m84073_231020_065047_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | B01 |
| class | Reptilia |
| collection_date | 2023-02-01 |
| collection_method | hand capture |
| collector | Peter Robertson |
| collector_sample_id | C30353 Zoos Victoria Collection Number |
| common_name | Victorian Grassland Earless Dragon |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Joanna Sumner |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358859 |
| date_of_transfer | 2023-11-02 |
| date_of_transfer_to_archive | 2023-11-03 |
| description | Victorian earless dragon (HiFi Revio) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 462455.0 |
| family | Agamidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_231020_065047_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20231031_TSI_AGRF_CAGRF230414583_m84073_231020_065047_s2 |
| genus | Tympanocryptis |
| habitat | grassland |
| insert_size_range | 12000.0 |
| institution_name | Museums Victoria (NMV) |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/462455 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-09-26 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | sub-adult |
| location_text | West of Melbourne |
| material_conc_ng_ul | 18.0 |
| material_extracted_by | Joanna Sumner |
| material_extraction_date | 2023-06-06 |
| material_extraction_method | Nanobind CCB kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Museums Victoria |
| sample_id | 102.100.100/460413 |
| sample_quality | freshly grown and harvested fibroblast cprimary cells |
| sample_type | fibroblast cells |
| scientific_name | Tympanocryptis pinguicolla |
| scientific_name_authorship | Mitchell, 1948 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | pinguicolla |
| specimen_id | NMVZ48771 |
| specimen_id_description | Museums Victoria Tissue Collection number |
| state_or_region | Victoria |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1509 |
| tissue_collection | Ian Potter Australian Wildlife BioBank |
| tissue_collection_type | Museum |
| tissue_number | NMVZ48771 |
| tissue_preservation | growth medium |
| tissue_type | fibroblast cells grown from tail tip |
| wild_captive | wild |
| work_order | 14052 |