Hairy marron, Reference genome, PacBio-HiFi, Abdomen
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-09-21 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Location information restricted |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| ancillary_notes | Offspring of "Marvin" and "Caralyn" |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1486/20230922_TSI_AGRF_CAGRF230414583_m84073_230913_014831_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | C01 |
| class | Malacostraca |
| collection_date | 2023-04-27 |
| collector | Harriet Mills | Perth Zoo |
| common_name | Hairy marron |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Kym Ottewell | DBCA |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358843 |
| date_of_transfer | 2023-09-22 |
| date_of_transfer_to_archive | 2023-09-25 |
| death_date | 2023-04-27 |
| description | Hairy Marron (Cherax tenuimanus) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 462463.0 |
| family | Parastacidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230913_014831_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230922_TSI_AGRF_CAGRF230414583_m84073_230913_014831_s2 |
| genotypic_sex | Undetermined |
| genus | Cherax |
| health_state | unknown |
| insert_size_range | 13000.0 |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/462463 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-08-30 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Juvenile |
| material_conc_ng_ul | 179.0 |
| material_extracted_by | Melissa Millar | DBCA |
| material_extraction_date | 2023-04-27 |
| material_extraction_method | Gentra Puregene kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Decapoda |
| phenotypic_sex | Undetermined |
| phylum | Arthropoda |
| prior_genetics | Microsatellite fragment analysis to determine hybrid status |
| sample_custodian | Kym Ottewell | DBCA |
| sample_id | 102.100.100/460420 |
| sample_quality | Fresh frozen |
| sample_type | Whole organism |
| scientific_name | Cherax tenuimanus |
| scientific_name_authorship | Smith, 1912 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Boomerang Pool, Margaret River, Western Australia |
| species | tenuimanus |
| specimen_id_description | Perth Zoo identifier |
| state_or_region | Western Australia |
| taxon_id | 99755.0 |
| taxonomic_group | Crustacean |
| ticket | BPAOPS-1486 |
| tissue_collection | DBCA Tissue Collection |
| tissue_collection_type | Perth Zoo captive breeding population |
| tissue_number | T15683 |
| tissue_preservation | -80C |
| tissue_preservation_temperature | -80 |
| tissue_type | Abdomen |
| wild_captive | captive |
| work_order | 14052 |