Yalmy Galaxias, Reference genome, PacBio-HiFi, caudal fin
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-11-08 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Location information restricted |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | NA |
| bait_set_reference | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1511/2023117_TSI_AGRF_CAGRF230414583_m84073_231020_075259_s4/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | D01 |
| certainty | NA |
| class | Actinopterygii |
| collection_date | 2023-04-20 |
| collection_method | Electrofisher, backpack |
| collector | Raadik, Tarmo A. |
| common_name | Yalmy Galaxias |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Matt McGee |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358855 |
| date_of_transfer | 2023-11-09 |
| date_of_transfer_to_archive | 2023-11-10 |
| description | Stocky Galaxias (HiFi Revio) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | QAGRF230414583 |
| facility_sample_id | 463483.0 |
| family | Galaxiidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_231020_075259_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 2023117_TSI_AGRF_CAGRF230414583_m84073_231020_075259_s4 |
| genotypic_sex | not determined |
| genus | Galaxias |
| habitat | river |
| health_state | unknown |
| insert_size_range | 12000.0 |
| institution_name | ARI Heidelberg |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/463483 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-09-26 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Yalmy R, Yalmy Road |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Salmoniformes |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Tarmo Raadik |
| sample_id | 102.100.100/460406 |
| sample_quality | unknown |
| sample_type | whole organism |
| scientific_name | Galaxias sp. 14 'Yalmy' |
| scientific_name_authorship | new species of Raadik |
| scientific_name_note | NA |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | sp. 14 'Yalmy' |
| specimen_id | NA |
| specimen_id_description | NA |
| state_or_region | Victoria |
| subspecies | NA |
| taxonomic_group | Fish |
| ticket | BPAOPS-1511 |
| tissue_collection | Fresh collection |
| tissue_collection_type | living collection |
| tissue_number | TR-6185 |
| tissue_preservation | propylene glycol |
| tissue_type | caudal fin |
| type_status | no |
| wild_captive | wild |
| work_order | 14052 |