McDowall's Galaxias, Reference genome, PacBio-HiFi, caudal fin
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until March 27, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-03-27 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Location information restricted |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | NA |
| bait_set_reference | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1570/20240325_TSI_AGRF_CAGRF24020347_m84073_240319_042622_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | NA |
| class | Actinopterygii |
| collection_date | 2023-04-20 |
| collection_method | Electrofisher, backpack |
| collector | Raadik, Tarmo A. |
| common_name | McDowall's Galaxias |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Matt McGee |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358868 |
| date_of_transfer | 2024-03-27 |
| date_of_transfer_to_archive | 2024-03-27 |
| description | 6 species of Galaxias (HiFi Revio) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24020347 |
| facility_sample_id | 463617.0 |
| family | Galaxiidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240319_042622_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240325_TSI_AGRF_CAGRF24020347_m84073_240319_042622_s1 |
| genotypic_sex | not determined |
| genus | Galaxias |
| habitat | river |
| health_state | unknown |
| insert_size_range | 10000.0 |
| institution_name | ARI Heidelberg |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/463617 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 300pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-08-18 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Rodger River, Waratah Flat Rd |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 6.0 |
| order | Salmoniformes |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Tarmo Raadik |
| sample_id | 102.100.100/460403 |
| sample_quality | unknown |
| sample_type | whole organism |
| scientific_name | Galaxias mcdowalli |
| scientific_name_authorship | Raadik, 2014 |
| scientific_name_note | NA |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | mcdowalli |
| specimen_id | NA |
| specimen_id_description | NA |
| state_or_region | Victoria |
| subspecies | NA |
| taxonomic_group | Fish |
| ticket | BPAOPS-1570 |
| tissue_collection | Fresh collection |
| tissue_collection_type | living collection |
| tissue_number | TR-4893 |
| tissue_preservation | propylene glycol |
| tissue_type | caudal fin |
| type_status | no |
| wild_captive | wild |
| work_order | 14061 |