Corangamite Water Skink, Reference genome, PacBio-HiFi, heart
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This dataset is currently under a short embargo period until May 9, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-05-09 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1583/20240503_TSI_AGRF_CAGRF24030207_m84073_240426_022908_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | high |
| class | Reptilia |
| collection_date | 2023-12-17 |
| collection_method | fishing rod with floss lasso |
| collector | Joanna Sumner |
| common_name | Corangamite Water Skink |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Joanna Sumner |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358875 |
| date_of_transfer | 2024-05-09 |
| date_of_transfer_to_archive | 2024-05-09 |
| death_date | 2023-12-18 |
| description | Corangamite water skink (Eulamprus tympanum) HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24030207 |
| facility_sample_id | 472946.0 |
| family | Scincidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240426_022908_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240503_TSI_AGRF_CAGRF24030207_m84073_240426_022908_s1 |
| genus | Eulamprus |
| habitat | volcanic rocks at edge of lake |
| health_state | good |
| insert_size_range | 12300.0 |
| institution_name | Museums Victoria |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/472946 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 300pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-22 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Dreeite Nature Conservation Reserve |
| material_extracted_by | Jessica Fenker, Museums Victoria Research Institute |
| material_extraction_date | 2024-03-18 |
| material_extraction_method | circulomics tissue extraction kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 2.0 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| sample_custodian | Hutchinson & Rawlinson 1995 |
| sample_id | 102.100.100/473346 |
| sample_quality | fresh frozen high quality |
| sample_type | tissue sample |
| scientific_name | Eulamprus tympanum marnieae |
| scientific_name_authorship | Hutchinson & Rawlinson, 1995 |
| scientific_name_note | NCBI taxon ID is forspecies, not specific to this sub-species |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | tympanum |
| specimen_id | NMV D76585 |
| specimen_id_description | Museums Victoria voucher registration number |
| state_or_region | Victoria |
| subspecies | marnieae |
| taxon_id | 204908.0 |
| taxonomic_group | reptile |
| ticket | BPAOPS-1583 |
| tissue_collection | Ian Potter Australian Wildlife BioBank |
| tissue_collection_type | museum |
| tissue_number | NMV Z75449 |
| tissue_preservation | frozen |
| tissue_preservation_temperature | frozen, -80, -196 |
| tissue_type | heart |
| wild_captive | wild |
| work_order | 14064 |