Corangamite Water Skink, Reference genome, PacBio-HiFi, heart
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-05-09 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1583/20240503_TSI_AGRF_CAGRF24030207_m84073_240426_022908_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | high |
| class | Reptilia |
| collection_date | 2023-12-18 |
| collection_method | fishing rod with floss lasso |
| collector | Joanna Sumner |
| common_name | Corangamite Water Skink |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Joanna Sumner |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358875 |
| date_of_transfer | 2024-05-09 |
| date_of_transfer_to_archive | 2024-05-09 |
| death_date | 2023-12-18 |
| description | Corangamite water skink (Eulamprus tympanum) HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24030207 |
| facility_sample_id | 472947.0 |
| family | Scincidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240426_022908_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240503_TSI_AGRF_CAGRF24030207_m84073_240426_022908_s1 |
| genus | Eulamprus |
| habitat | volcanic rocks at edge of lake |
| health_state | good |
| insert_size_range | 14000.0 |
| institution_name | Museums Victoria |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/472947 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 300pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-22 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Pomborneit North Nature Conservation Reserve |
| material_conc_ng_ul | 136.0 |
| material_extracted_by | Joanna Sumner, Museums Victoria Research Institute |
| material_extraction_date | 2024-03-14 |
| material_extraction_method | circulomics tissue extraction kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | dissection and evert hemipenes |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 2.0 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Hutchinson & Rawlinson 1995 |
| sample_id | 102.100.100/473347 |
| sample_quality | fresh frozen high quality |
| sample_type | tissue sample |
| scientific_name | Eulamprus tympanum marnieae |
| scientific_name_authorship | Hutchinson & Rawlinson, 1995 |
| scientific_name_note | NCBI taxon ID is forspecies, not specific to this sub-species |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | tympanum |
| specimen_id | NMV D76586 |
| specimen_id_description | Museums Victoria voucher registration number |
| state_or_region | Victoria |
| subspecies | marnieae |
| taxon_id | 204908.0 |
| taxonomic_group | reptile |
| ticket | BPAOPS-1583 |
| tissue_collection | Ian Potter Australian Wildlife BioBank |
| tissue_collection_type | museum |
| tissue_number | NMV Z77725 |
| tissue_preservation | frozen |
| tissue_preservation_temperature | frozen, -80, -196 |
| tissue_type | heart |
| wild_captive | wild |
| work_order | 14064 |