Mount Lidgebird pinwheel snail, Reference genome, PacBio-HiFi, Muscle_reproductivetract
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-06-04 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | open |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/e825da0a-2abf-4ce2-bbf3-6a23cd0abe8d |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1593/20240603_TSI_AGRF_CAGRF24030326_m84073_240507_054822_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | High |
| class | Gastropoda |
| collection_date | 2024-03-18 |
| collection_method | Dissection |
| collector | Isabel Hyman |
| collector_sample_id | 1269.0 |
| common_name | Mount Lidgebird pinwheel snail |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358877 |
| date_of_transfer | 2024-06-04 |
| date_of_transfer_to_archive | 2024-06-05 |
| death_date | 2024-03-18 |
| description | (Pseudocharopa ledgbirdi) HiFi Revio |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24030326 |
| facility_sample_id | 473443.0 |
| family | Charopidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240507_054822_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240603_TSI_AGRF_CAGRF24030326_m84073_240507_054822_s1 |
| genotypic_sex | Male |
| genus | pseudocharopa |
| habitat | Rainforest |
| health_state | Heathly |
| insert_size_range | 9000.0 |
| institution_name | University of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/473443 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 300pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Adult |
| location_text | Lord Howe Island |
| material_conc_ng_ul | 22.3 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2024-03-18 |
| material_extraction_method | Circulomics Kit ("Nanobind Tissue Big DNA Kit v1.0 11/19") |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Stylommatophora |
| phenotypic_sex | Male |
| phylum | Mollusca |
| prior_genetics | NA |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/473038 |
| sample_quality | High |
| sample_type | muscle_organ |
| scientific_name | Pseudocharopa ledgbirdi |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Lorde Howe |
| species | ledgbirdi |
| specimen_id | 1269.0 |
| specimen_id_description | Museum collection |
| state_or_region | NSW |
| taxon_id | 9751589.0 |
| taxonomic_group | Mollusc |
| ticket | BPAOPS-1593 |
| tissue_collection | Australian Museum |
| tissue_collection_type | Dissection |
| tissue_number | 1269_muscle |
| tissue_preservation | Flash frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Muscle_reproductivetract |
| wild_captive | Wild |
| work_order | 14065 |