Mount Lidgebird pinwheel snail, Reference genome, PacBio-HiFi, Muscle_reproductivetract
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until June 4, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-06-04 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | open |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/e825da0a-2abf-4ce2-bbf3-6a23cd0abe8d |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1593/20240603_TSI_AGRF_CAGRF24030326_m84073_240507_054822_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | High |
| class | Gastropoda |
| collection_date | 2024-03-18 |
| collection_method | Dissection |
| collector | Isabel Hyman |
| collector_sample_id | 1269.0 |
| common_name | Mount Lidgebird pinwheel snail |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358877 |
| date_of_transfer | 2024-06-04 |
| date_of_transfer_to_archive | 2024-06-05 |
| death_date | 2024-03-18 |
| description | (Pseudocharopa ledgbirdi) HiFi Revio |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24030326 |
| facility_sample_id | 473443.0 |
| family | Charopidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240507_054822_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240603_TSI_AGRF_CAGRF24030326_m84073_240507_054822_s1 |
| genotypic_sex | Male |
| genus | pseudocharopa |
| habitat | Rainforest |
| health_state | Heathly |
| insert_size_range | 9000.0 |
| institution_name | University of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/473443 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 300pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Adult |
| location_text | Lord Howe Island |
| material_conc_ng_ul | 22.3 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2024-03-18 |
| material_extraction_method | Circulomics Kit ("Nanobind Tissue Big DNA Kit v1.0 11/19") |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Stylommatophora |
| phenotypic_sex | Male |
| phylum | Mollusca |
| prior_genetics | NA |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/473038 |
| sample_quality | High |
| sample_type | muscle_organ |
| scientific_name | Pseudocharopa ledgbirdi |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Lorde Howe |
| species | ledgbirdi |
| specimen_id | 1269.0 |
| specimen_id_description | Museum collection |
| state_or_region | NSW |
| taxon_id | 9751589.0 |
| taxonomic_group | Mollusc |
| ticket | BPAOPS-1593 |
| tissue_collection | Australian Museum |
| tissue_collection_type | Dissection |
| tissue_number | 1269_muscle |
| tissue_preservation | Flash frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Muscle_reproductivetract |
| wild_captive | Wild |
| work_order | 14065 |