kowari, Reference genome, PacBio-HiFi, heart
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-06-13 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Open |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/c342ff42-9ee4-41f6-8365-62b15c4d27f2 |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1596/202406012_TSI_AGRF_CAGRF24040076_m84073_240607_064335_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | low |
| class | Mammalia |
| collection_method | Dissection |
| collector | South Australian Museum |
| collector_sample_id | ABTC7553 |
| common_name | kowari |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358878 |
| date_of_transfer | 2024-06-13 |
| date_of_transfer_to_archive | 2024-06-14 |
| description | (Dasyuroides byrnei) HiFi Revio |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24040076 |
| facility_sample_id | 473039.0 |
| family | Dasyuridae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240607_064335_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 202406012_TSI_AGRF_CAGRF24040076_m84073_240607_064335_s1 |
| genotypic_sex | not determined |
| genus | Dasyuroides |
| habitat | Desert |
| health_state | unknown |
| insert_size_range | 10500.0 |
| institution_name | University of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/473444 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 300pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Adult |
| material_conc_ng_ul | 301.6 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2024-03-11 |
| material_extraction_method | Circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-07-11 |
| metadata_revision_filename | 20240711_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Dasyuromorphia |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/473039 |
| sample_quality | high |
| sample_type | organ |
| scientific_name | Dasyuroides byrnei |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | byrnei |
| specimen_id | ABTC7553 |
| specimen_id_description | South Australian Museum |
| taxon_id | 32544 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1596 |
| tissue_collection | Dissection |
| tissue_number | ABTC7553_heart |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | heart |
| wild_captive | captive |
| work_order | NA |