(Workshop) Reference Genome, Illumina-shortread
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:bpa-bioinformatics-workshop-consortium-members |
| Access Control Date | 2024-01-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1356/20230130_FUN_AGRF_HNGM7DSX5/ |
| bioplatforms_dataset_id | 102.100.100/467793 |
| bioplatforms_library_id | 102.100.100/465802 |
| bioplatforms_project | Fungi |
| bioplatforms_sample_id | 102.100.100/463803 |
| ccg_jira_ticket | BPAOPS-1356 |
| data_context | Reference Genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2023-01-30 |
| date_of_transfer_to_archive | 2023-01-31 |
| description | Sequencing of 100 specimens of Psilocybin mushrooms |
| facility_project_code | CAGRF220811578 |
| facility_sample_id | 13094-10 |
| flow_cell_id | library |
| flowcell_id | HNGM7DSX5 |
| flowcell_type | S4-300 |
| folder_name | 202230130_FUN_AGRF_HNGM7DSX5 |
| insert_size_range | 350 bp |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 465802 |
| library_index_id | UDP0010-F |
| library_index_id_dual | UDP0010-R |
| library_index_seq_dual | TGTCGCTGGT |
| library_index_sequence | AGTCAGACGA |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.2206503267 |
| library_pcr_cycles | 12.0 |
| library_prep_date | 2022-11-17 |
| library_prepared_by | Katrina Karapanos |
| library_selection | Enzymatic Tagementation |
| library_source | Genome DNA |
| library_strategy | Whole Genome Sequencing |
| library_type | Illumina-shortread |
| note | This is a reupload of 202221129_FUN_AGRF_HNGM7DSX5 with re-aligned sample labels |
| project_lead | Alistair McTaggart |
| sample_id | 13-3 |
| scientific_name | Psilocybe subaeruginosa |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | V1.5 |
| sequencing_model | 6000.0 |
| sequencing_platform | NovaSeq |
| specimen_id | NA |
| ticket | BPAOPS-1356 |
| work_order | 21001 |