(Workshop) Workshop Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395385
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:bpa-bioinformatics-workshop-consortium-members |
| Access Control Date | 2024-08-10 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1452/20230809_PP_AGRF_CAGRF230615297_m84073_230802_055109_s2/ |
| bioplatforms_dataset_id | 102.100.100/399036 |
| bioplatforms_library_id | 102.100.100/397639 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP039_R_commune |
| bioplatforms_sample_id | 102.100.100/395385 |
| ccg_jira_ticket | BPAOPS-1452 |
| cell_postion | C01 |
| class | Leotiomycetes |
| collection_date | 2000-09-19 |
| collector | Stoddart, B. |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio |
| date_data_published | 22/08/2023 |
| date_of_transfer | 2023-08-11 |
| date_of_transfer_to_archive | 2023-08-11 |
| decimal_latitude_public | -34.54 |
| decimal_longitude_public | 138.79 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1452 |
| experimental_design | 12.0.0.172289 |
| facility | AGRF |
| facility_project_code | CAGRF230615297 |
| facility_sample_id | 395385 |
| family | Ploettnerulaceae |
| fast5_compression | NA |
| flowcell_id | m84073_230802_055109_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230809_PP_AGRF_CAGRF230615297_m84073_230802_055109_s2 |
| genus | Rhynchosporium |
| host_common_name | Barley |
| host_family | Poaceae |
| host_organ | Leaf |
| host_scientific_name | Hordeum vulgare |
| host_status | Cereal grain |
| host_symptom | Leaf blotch |
| insert_size_range | 14098.0 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 397639 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-08-01 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| location_text | Kingsford |
| material_conc_ng_ul | 34.1 |
| material_extracted_by | Kelly Hill |
| material_extraction_date | 2023-05-25 |
| material_extraction_method | CTAB Method |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-08-16 |
| metadata_revision_filename | 2024-08-12_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Helotiales |
| phylum | Ascomycota |
| project_lead | Tara Garrard | SARDI |
| sample_custodian | Tara Garrard | SARDI |
| sample_id | 395385 |
| scientific_name | Rhynchosporium commune |
| scientific_name_authorship | P.L. Zaffarano, B. McDonald & C.C. Linde (2010) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | commune |
| specimen_custodian | South Australian Research and Development Institute (SARDI) |
| specimen_id | 332a |
| specimen_id_description | South Australian Research and Development Institute (SARDI) |
| state_or_region | South Australia |
| taxon_id | 914237 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1452 |